Software
R/GEint
An R package with tools for inference on gene-environment interaction effects. Current developmental version is also available at Github.
R/GBJ
An R package to calculate the Generalized Berk-Jones statistic and p-value for set-based inference in genetic association studies. Also computes the Generalized Higher Criticism and Minimum p-value statistics. Current developmental version is also available at Github.
R/reconstructKM
An R package to reconstruct individual-level data from Kaplan-Meier plots published in academic journals. Current developmental version is also available at Github.
R/ICSKAT
An R package to perform the interval-censored sequence kernel association test. Current developmental version is also available at Github.
R/csmGmm
An R package to perform large-scale composite null hypothesis testing with the conditionally symmetric Gaussian mixture model.
R/SIMICO
An R package to perform the interval-censored sequence kernel association test simultaneously with multiple outcomes.
R/DBpower
An R package to calculate power bounds and exact power (small sets only) for detection boundary tests (e.g. Berk-Jones, Generalized Berk-Jones, innovated Berk-Jones) used in set-based inference studies.
R/crSKAT
An R package to perform the interval-censored sequence kernel association test in the presence of a competing risk.